Protein–RNA interactions for Protein: P48065

SLC6A12, Sodium- and chloride-dependent betaine transporter, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A12P48065 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC6A12P48065 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SLC6A12P48065 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.19□□□□□ -0.14
SLC6A12P48065 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC6A12P48065 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 AC011474.4-201ENST00000623523 2076 ntBASIC14.18□□□□□ -0.14
SLC6A12P48065 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
SLC6A12P48065 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC6A12P48065 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.18□□□□□ -0.14
SLC6A12P48065 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC6A12P48065 MIR1909-201ENST00000411312 80 ntBASIC14.18□□□□□ -0.14
SLC6A12P48065 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.18□□□□□ -0.14
SLC6A12P48065 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.18□□□□□ -0.14
SLC6A12P48065 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC6A12P48065 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC6A12P48065 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.18□□□□□ -0.14
SLC6A12P48065 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
SLC6A12P48065 AC005586.2-201ENST00000563946 837 ntBASIC14.18□□□□□ -0.14
SLC6A12P48065 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.18□□□□□ -0.14
SLC6A12P48065 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC6A12P48065 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC6A12P48065 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC6A12P48065 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC6A12P48065 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SLC6A12P48065 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SLC6A12P48065 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 E2F3P2-201ENST00000447755 1422 ntBASIC14.17□□□□□ -0.14
SLC6A12P48065 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.17□□□□□ -0.14
SLC6A12P48065 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SLC6A12P48065 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.17□□□□□ -0.14
SLC6A12P48065 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SLC6A12P48065 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.17□□□□□ -0.14
SLC6A12P48065 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.17□□□□□ -0.14
SLC6A12P48065 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.17□□□□□ -0.14
SLC6A12P48065 DUX4L46-201ENST00000566845 751 ntBASIC14.17□□□□□ -0.14
SLC6A12P48065 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SLC6A12P48065 MIR4783-201ENST00000580343 82 ntBASIC14.17□□□□□ -0.14
SLC6A12P48065 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SLC6A12P48065 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.17□□□□□ -0.14
SLC6A12P48065 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.17□□□□□ -0.14
SLC6A12P48065 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 AL023775.1-201ENST00000454907 1746 ntBASIC14.17□□□□□ -0.14
SLC6A12P48065 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SLC6A12P48065 MST1P2-201ENST00000457982 2291 ntBASIC14.17□□□□□ -0.14
SLC6A12P48065 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.17□□□□□ -0.14
SLC6A12P48065 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
SLC6A12P48065 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SLC6A12P48065 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms