Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DOAP06340 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC17.27■□□□□ 0.35
HLA-DOAP06340 FAM90A2P-201ENST00000511144 1395 ntBASIC17.27■□□□□ 0.35
HLA-DOAP06340 FAM90A25P-201ENST00000528404 1395 ntBASIC17.27■□□□□ 0.35
HLA-DOAP06340 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DOAP06340 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DOAP06340 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DOAP06340 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.27■□□□□ 0.35
HLA-DOAP06340 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HLA-DOAP06340 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 AC019193.1-201ENST00000506678 823 ntBASIC17.26■□□□□ 0.35
HLA-DOAP06340 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 AC027237.1-201ENST00000560942 655 ntBASIC17.26■□□□□ 0.35
HLA-DOAP06340 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 AC124068.2-201ENST00000569473 1109 ntBASIC17.26■□□□□ 0.35
HLA-DOAP06340 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HLA-DOAP06340 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DOAP06340 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AC015909.3-201ENST00000572855 1794 ntBASIC17.25■□□□□ 0.35
HLA-DOAP06340 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 MBP-201ENST00000354542 575 ntTSL 2 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 UFM1-202ENST00000379649 846 ntTSL 4 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AC026320.2-201ENST00000434379 478 ntBASIC17.25■□□□□ 0.35
HLA-DOAP06340 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 RN7SL67P-201ENST00000492147 296 ntBASIC17.25■□□□□ 0.35
HLA-DOAP06340 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AC026803.1-201ENST00000569130 274 ntBASIC17.25■□□□□ 0.35
HLA-DOAP06340 MEG3_2.1-201ENST00000611456 105 ntBASIC17.25■□□□□ 0.35
HLA-DOAP06340 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AC126177.1-201ENST00000547829 2218 ntBASIC17.25■□□□□ 0.35
HLA-DOAP06340 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DOAP06340 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HLA-DOAP06340 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.24■□□□□ 0.35
HLA-DOAP06340 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HLA-DOAP06340 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms