Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLDN9O95484 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLDN9O95484 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.29□□□□□ -0.12
CLDN9O95484 KHSRPP1-201ENST00000427983 1768 ntBASIC14.29□□□□□ -0.12
CLDN9O95484 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.29□□□□□ -0.12
CLDN9O95484 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLDN9O95484 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.29□□□□□ -0.12
CLDN9O95484 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLDN9O95484 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLDN9O95484 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLDN9O95484 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLDN9O95484 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.29□□□□□ -0.12
CLDN9O95484 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLDN9O95484 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
CLDN9O95484 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CLDN9O95484 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 AC041040.2-201ENST00000622926 2899 ntBASIC14.28□□□□□ -0.12
CLDN9O95484 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CLDN9O95484 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.28□□□□□ -0.12
CLDN9O95484 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.28□□□□□ -0.12
CLDN9O95484 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.28□□□□□ -0.12
CLDN9O95484 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 C2orf27AP3-201ENST00000434123 579 ntBASIC14.28□□□□□ -0.12
CLDN9O95484 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 SLC25A47P1-201ENST00000531577 414 ntBASIC14.28□□□□□ -0.12
CLDN9O95484 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.28□□□□□ -0.12
CLDN9O95484 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.28□□□□□ -0.12
CLDN9O95484 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 GNRHR2-203ENST00000581100 1187 ntBASIC14.28□□□□□ -0.12
CLDN9O95484 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.28□□□□□ -0.12
CLDN9O95484 AL354718.3-201ENST00000616414 581 ntBASIC14.28□□□□□ -0.12
CLDN9O95484 AC020910.6-201ENST00000623084 1459 ntBASIC14.28□□□□□ -0.12
CLDN9O95484 CR382287.1-201ENST00000623954 586 ntBASIC14.28□□□□□ -0.12
CLDN9O95484 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
CLDN9O95484 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLDN9O95484 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLDN9O95484 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.27□□□□□ -0.12
CLDN9O95484 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.12
CLDN9O95484 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.27□□□□□ -0.12
CLDN9O95484 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
CLDN9O95484 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.27□□□□□ -0.12
CLDN9O95484 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CLDN9O95484 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLDN9O95484 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CLDN9O95484 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.27□□□□□ -0.13
CLDN9O95484 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 PUDPP3-201ENST00000445368 636 ntBASIC14.27□□□□□ -0.13
CLDN9O95484 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.27□□□□□ -0.13
CLDN9O95484 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.27□□□□□ -0.13
CLDN9O95484 RNA5SP486-201ENST00000515961 83 ntBASIC14.27□□□□□ -0.13
CLDN9O95484 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.27□□□□□ -0.13
CLDN9O95484 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.27□□□□□ -0.13
CLDN9O95484 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.27□□□□□ -0.13
CLDN9O95484 AC106820.3-201ENST00000561653 397 ntBASIC14.27□□□□□ -0.13
CLDN9O95484 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.27□□□□□ -0.13
CLDN9O95484 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.27□□□□□ -0.13
CLDN9O95484 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.27□□□□□ -0.13
CLDN9O95484 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.27□□□□□ -0.13
CLDN9O95484 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLDN9O95484 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.27□□□□□ -0.13
CLDN9O95484 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.27□□□□□ -0.13
CLDN9O95484 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms