Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 FKBP4P6-201ENST00000457486 1332 ntBASIC12.45□□□□□ -0.42
ABCA1O95477 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 AC009093.2-202ENST00000620513 2079 ntBASIC12.45□□□□□ -0.42
ABCA1O95477 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
ABCA1O95477 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.44□□□□□ -0.42
ABCA1O95477 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 CICP11-201ENST00000434745 2827 ntBASIC12.44□□□□□ -0.42
ABCA1O95477 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC12.44□□□□□ -0.42
ABCA1O95477 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC12.44□□□□□ -0.42
ABCA1O95477 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 AC004899.2-201ENST00000622993 3860 ntBASIC12.44□□□□□ -0.42
ABCA1O95477 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 AC138035.3-201ENST00000622706 2791 ntBASIC12.44□□□□□ -0.42
ABCA1O95477 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC12.44□□□□□ -0.42
ABCA1O95477 AC098935.1-201ENST00000446057 611 ntBASIC12.44□□□□□ -0.42
ABCA1O95477 AC116345.2-201ENST00000512837 523 ntBASIC12.44□□□□□ -0.42
ABCA1O95477 NPM1P43-201ENST00000558669 786 ntBASIC12.44□□□□□ -0.42
ABCA1O95477 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC12.44□□□□□ -0.42
ABCA1O95477 AL603764.1-201ENST00000636452 321 ntBASIC12.44□□□□□ -0.42
ABCA1O95477 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC12.44□□□□□ -0.42
ABCA1O95477 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC12.44□□□□□ -0.42
ABCA1O95477 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA1O95477 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 CHL1-201ENST00000256509 8023 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
ABCA1O95477 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA1O95477 INE2-201ENST00000630399 1874 ntBASIC12.43□□□□□ -0.42
ABCA1O95477 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA1O95477 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms