Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 AL391280.1-201ENST00000506969 1062 ntBASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 AC015936.2-201ENST00000593177 259 ntBASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 AC016397.2-201ENST00000624848 1985 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 RN7SKP175-201ENST00000408472 289 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 C2orf27AP3-201ENST00000434123 579 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 RNA5SP486-201ENST00000515961 83 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 SLC25A47P1-201ENST00000531577 414 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 GNRHR2-203ENST00000581100 1187 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 AL354718.3-201ENST00000616414 581 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 CR382287.1-201ENST00000623954 586 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 KHSRPP1-201ENST00000427983 1768 ntBASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS29Q9UBQ0 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS29Q9UBQ0 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms