Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS33AQ96AX1 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS33AQ96AX1 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 AC105206.1-202ENST00000314927 2368 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 MIR943-201ENST00000401286 94 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 AC241585.1-201ENST00000433527 519 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 AC026434.2-201ENST00000506094 1078 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 IGHV3-42-201ENST00000520410 361 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 DUX4L47-201ENST00000566374 394 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 AC004790.1-201ENST00000612686 536 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 COL6A4P2-202ENST00000504443 2753 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS33AQ96AX1 KRT8P24-201ENST00000560290 1559 ntBASIC14.26□□□□□ -0.13
VPS33AQ96AX1 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 AC020910.6-201ENST00000623084 1459 ntBASIC14.25□□□□□ -0.13
VPS33AQ96AX1 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 FAM86GP-201ENST00000448322 971 ntBASIC14.25□□□□□ -0.13
VPS33AQ96AX1 MYADML-201ENST00000474610 2147 ntBASIC14.25□□□□□ -0.13
VPS33AQ96AX1 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 RARRES2P5-201ENST00000564013 466 ntBASIC14.25□□□□□ -0.13
VPS33AQ96AX1 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 PRSS30P-206ENST00000641773 873 ntBASIC14.25□□□□□ -0.13
VPS33AQ96AX1 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS33AQ96AX1 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms