Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 BRI3P1-201ENST00000440440 378 ntBASIC19.6■□□□□ 0.73
NPHP3Q7Z494 GRPEL2P1-201ENST00000453145 339 ntBASIC19.6■□□□□ 0.73
NPHP3Q7Z494 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 VENTXP3-201ENST00000546480 773 ntBASIC19.6■□□□□ 0.73
NPHP3Q7Z494 APOC1-209ENST00000592885 562 ntTSL 3 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 AL160191.2-201ENST00000603975 601 ntBASIC19.6■□□□□ 0.73
NPHP3Q7Z494 AL359091.4-201ENST00000610052 409 ntBASIC19.6■□□□□ 0.73
NPHP3Q7Z494 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP3Q7Z494 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 CASP3-205ENST00000517513 964 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 AL021707.6-201ENST00000609212 491 ntBASIC19.59■□□□□ 0.73
NPHP3Q7Z494 MIR6816-201ENST00000620368 66 ntBASIC19.59■□□□□ 0.73
NPHP3Q7Z494 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 AC067931.2-201ENST00000623655 2003 ntBASIC19.59■□□□□ 0.73
NPHP3Q7Z494 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP3Q7Z494 MSANTD2P1-201ENST00000445341 1368 ntBASIC19.59■□□□□ 0.73
NPHP3Q7Z494 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 AC019109.1-201ENST00000401725 1874 ntBASIC19.58■□□□□ 0.73
NPHP3Q7Z494 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 RN7SL375P-201ENST00000492442 298 ntBASIC19.58■□□□□ 0.73
NPHP3Q7Z494 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms