Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
HSPG2P98160 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
HSPG2P98160 MIR339-201ENST00000362153 94 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
HSPG2P98160 HNRNPA1P59-201ENST00000430583 918 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC8.75□□□□□ -1.01
HSPG2P98160 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC8.75□□□□□ -1.01
HSPG2P98160 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 AP003170.2-201ENST00000544730 786 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC8.75□□□□□ -1.01
HSPG2P98160 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
HSPG2P98160 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC8.75□□□□□ -1.01
HSPG2P98160 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 LTB4R2-202ENST00000528054 3092 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC8.75□□□□□ -1.01
HSPG2P98160 AC005011.1-201ENST00000455206 210 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 TBC1D3P6-201ENST00000505954 962 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 KRT127P-201ENST00000547183 433 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC8.75□□□□□ -1.01
HSPG2P98160 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 FAM223B-202ENST00000598177 713 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 FAM223A-202ENST00000625204 713 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC8.75□□□□□ -1.01
HSPG2P98160 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC8.75□□□□□ -1.01
HSPG2P98160 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC8.75□□□□□ -1.01
HSPG2P98160 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC8.75□□□□□ -1.01
HSPG2P98160 GOLGA2P8-201ENST00000505201 779 ntBASIC8.75□□□□□ -1.01
HSPG2P98160 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HSPG2P98160 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC8.74□□□□□ -1.01
HSPG2P98160 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC8.74□□□□□ -1.01
HSPG2P98160 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 AC002511.3-201ENST00000638098 420 ntBASIC8.74□□□□□ -1.01
HSPG2P98160 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC8.74□□□□□ -1.01
HSPG2P98160 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 PRAL-201ENST00000624952 3286 ntBASIC8.74□□□□□ -1.01
HSPG2P98160 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HSPG2P98160 TP73-207ENST00000378290 1831 ntTSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.01
HSPG2P98160 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC8.74□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms