Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.68□□□□□ -0.22
RNF4P78317 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.68□□□□□ -0.22
RNF4P78317 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.68□□□□□ -0.22
RNF4P78317 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 AC021723.1-201ENST00000486306 515 ntBASIC13.68□□□□□ -0.22
RNF4P78317 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
RNF4P78317 AC005730.2-201ENST00000564549 1184 ntBASIC13.68□□□□□ -0.22
RNF4P78317 MIR4783-201ENST00000580343 82 ntBASIC13.68□□□□□ -0.22
RNF4P78317 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.68□□□□□ -0.22
RNF4P78317 AC007663.3-201ENST00000609632 465 ntBASIC13.68□□□□□ -0.22
RNF4P78317 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.68□□□□□ -0.22
RNF4P78317 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 AL162426.1-201ENST00000624141 743 ntBASIC13.68□□□□□ -0.22
RNF4P78317 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
RNF4P78317 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.68□□□□□ -0.22
RNF4P78317 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RNF4P78317 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RNF4P78317 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 CICP24-201ENST00000605464 2705 ntBASIC13.67□□□□□ -0.22
RNF4P78317 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.67□□□□□ -0.22
RNF4P78317 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 AL022328.3-201ENST00000607943 679 ntBASIC13.67□□□□□ -0.22
RNF4P78317 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.67□□□□□ -0.22
RNF4P78317 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 KRT8P29-201ENST00000420409 1371 ntBASIC13.67□□□□□ -0.22
RNF4P78317 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
RNF4P78317 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
RNF4P78317 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.67□□□□□ -0.22
RNF4P78317 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RNF4P78317 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.67□□□□□ -0.22
RNF4P78317 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms