Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
LHX1P48742 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.56■□□□□ 0.08
LHX1P48742 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 RN7SKP214-201ENST00000364208 315 ntBASIC15.56■□□□□ 0.08
LHX1P48742 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.56■□□□□ 0.08
LHX1P48742 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.56■□□□□ 0.08
LHX1P48742 MIR769-201ENST00000390225 118 ntBASIC15.56■□□□□ 0.08
LHX1P48742 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.56■□□□□ 0.08
LHX1P48742 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15.56■□□□□ 0.08
LHX1P48742 BCYRN1-201ENST00000418539 200 ntBASIC15.56■□□□□ 0.08
LHX1P48742 AC078875.1-201ENST00000431907 724 ntBASIC15.56■□□□□ 0.08
LHX1P48742 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 ACTG1P17-201ENST00000558391 1119 ntBASIC15.56■□□□□ 0.08
LHX1P48742 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
LHX1P48742 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.56■□□□□ 0.08
LHX1P48742 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.56■□□□□ 0.08
LHX1P48742 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.56■□□□□ 0.08
LHX1P48742 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.56■□□□□ 0.08
LHX1P48742 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 OR2I1P-209ENST00000641730 5365 ntBASIC15.56■□□□□ 0.08
LHX1P48742 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LHX1P48742 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.55■□□□□ 0.08
LHX1P48742 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.55■□□□□ 0.08
LHX1P48742 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
LHX1P48742 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.55■□□□□ 0.08
LHX1P48742 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.55■□□□□ 0.08
LHX1P48742 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.55■□□□□ 0.08
LHX1P48742 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
LHX1P48742 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.55■□□□□ 0.08
LHX1P48742 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.55■□□□□ 0.08
LHX1P48742 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.55■□□□□ 0.08
LHX1P48742 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 TPT1P11-201ENST00000458482 498 ntBASIC15.55■□□□□ 0.08
LHX1P48742 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.55■□□□□ 0.08
LHX1P48742 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.55■□□□□ 0.08
LHX1P48742 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.55■□□□□ 0.08
LHX1P48742 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.55■□□□□ 0.08
LHX1P48742 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.55■□□□□ 0.08
LHX1P48742 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.55■□□□□ 0.08
LHX1P48742 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.55■□□□□ 0.08
LHX1P48742 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.55■□□□□ 0.08
LHX1P48742 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LHX1P48742 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.55■□□□□ 0.08
LHX1P48742 MIR6074-201ENST00000612054 107 ntBASIC15.55■□□□□ 0.08
LHX1P48742 AC091544.8-201ENST00000619490 361 ntBASIC15.55■□□□□ 0.08
LHX1P48742 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LHX1P48742 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LHX1P48742 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.54■□□□□ 0.08
LHX1P48742 AHCYP4-201ENST00000419201 1315 ntBASIC15.54■□□□□ 0.08
LHX1P48742 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.54■□□□□ 0.08
LHX1P48742 RCC2P8-201ENST00000502779 1035 ntBASIC15.54■□□□□ 0.08
LHX1P48742 AC022447.6-201ENST00000515522 438 ntBASIC15.54■□□□□ 0.08
LHX1P48742 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.54■□□□□ 0.08
LHX1P48742 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.54■□□□□ 0.08
LHX1P48742 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.54■□□□□ 0.08
LHX1P48742 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LHX1P48742 RN7SL774P-201ENST00000577467 290 ntBASIC15.54■□□□□ 0.08
LHX1P48742 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.54■□□□□ 0.08
LHX1P48742 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms