Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL18A1P39060 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
COL18A1P39060 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 GALP-202ENST00000440823 889 ntTSL 5 BASIC18.77■□□□□ 0.6
COL18A1P39060 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
COL18A1P39060 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL18A1P39060 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL18A1P39060 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.77■□□□□ 0.59
COL18A1P39060 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL18A1P39060 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL18A1P39060 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC18.77■□□□□ 0.59
COL18A1P39060 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL18A1P39060 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL18A1P39060 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC18.76■□□□□ 0.59
COL18A1P39060 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC18.76■□□□□ 0.59
COL18A1P39060 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 HNRNPA1P58-201ENST00000403629 610 ntBASIC18.76■□□□□ 0.59
COL18A1P39060 AC092570.1-201ENST00000414446 469 ntBASIC18.76■□□□□ 0.59
COL18A1P39060 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC18.76■□□□□ 0.59
COL18A1P39060 GOLGA6L16P-201ENST00000441780 1299 ntBASIC18.76■□□□□ 0.59
COL18A1P39060 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC18.76■□□□□ 0.59
COL18A1P39060 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC18.76■□□□□ 0.59
COL18A1P39060 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC18.76■□□□□ 0.59
COL18A1P39060 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC18.76■□□□□ 0.59
COL18A1P39060 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 AC007952.5-201ENST00000572818 1486 ntBASIC18.76■□□□□ 0.59
COL18A1P39060 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC18.76■□□□□ 0.59
COL18A1P39060 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.76■□□□□ 0.59
COL18A1P39060 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL18A1P39060 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC18.76■□□□□ 0.59
COL18A1P39060 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC18.76■□□□□ 0.59
COL18A1P39060 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC18.76■□□□□ 0.59
COL18A1P39060 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 TBC1D27-202ENST00000424239 1573 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
COL18A1P39060 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL18A1P39060 IFNWP2-201ENST00000431203 580 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 NRADDP-201ENST00000437305 691 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 NALT1-202ENST00000450304 437 ntTSL 3 BASIC18.75■□□□□ 0.59
COL18A1P39060 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC18.75■□□□□ 0.59
COL18A1P39060 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 CD81-209ENST00000492627 886 ntTSL 3 BASIC18.75■□□□□ 0.59
COL18A1P39060 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL18A1P39060 TYMSP2-201ENST00000589501 424 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 NAV1-210ENST00000593583 726 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 GGNBP1-204ENST00000613113 887 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 AL591424.3-201ENST00000614278 872 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 GSN-209ENST00000449733 2702 ntTSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 LINC00554-201ENST00000564841 3011 ntBASIC18.75■□□□□ 0.59
COL18A1P39060 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.75■□□□□ 0.59
COL18A1P39060 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.75■□□□□ 0.59
COL18A1P39060 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL18A1P39060 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC18.75■□□□□ 0.59
COL18A1P39060 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC18.75■□□□□ 0.59
COL18A1P39060 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.74■□□□□ 0.59
COL18A1P39060 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
COL18A1P39060 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
COL18A1P39060 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 OR2W2P-201ENST00000406313 909 ntBASIC18.74■□□□□ 0.59
COL18A1P39060 AP000244.1-201ENST00000424582 201 ntBASIC18.74■□□□□ 0.59
COL18A1P39060 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC18.74■□□□□ 0.59
COL18A1P39060 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC18.74■□□□□ 0.59
COL18A1P39060 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL18A1P39060 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms