Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.91□□□□□ -0.18
LDB3O75112 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
LDB3O75112 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.91□□□□□ -0.18
LDB3O75112 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.91□□□□□ -0.18
LDB3O75112 PUDPP3-201ENST00000445368 636 ntBASIC13.91□□□□□ -0.18
LDB3O75112 ALG3P1-201ENST00000508806 1114 ntBASIC13.91□□□□□ -0.18
LDB3O75112 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 AC022447.6-201ENST00000515522 438 ntBASIC13.91□□□□□ -0.18
LDB3O75112 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.91□□□□□ -0.18
LDB3O75112 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.91□□□□□ -0.18
LDB3O75112 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.91□□□□□ -0.18
LDB3O75112 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LDB3O75112 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
LDB3O75112 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
LDB3O75112 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.9□□□□□ -0.18
LDB3O75112 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 AC100850.1-201ENST00000506768 649 ntBASIC13.9□□□□□ -0.18
LDB3O75112 RNA5SP412-201ENST00000516234 123 ntBASIC13.9□□□□□ -0.18
LDB3O75112 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.9□□□□□ -0.18
LDB3O75112 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.9□□□□□ -0.18
LDB3O75112 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 AP001002.3-201ENST00000623482 206 ntBASIC13.9□□□□□ -0.18
LDB3O75112 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.9□□□□□ -0.18
LDB3O75112 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LDB3O75112 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.9□□□□□ -0.18
LDB3O75112 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms