Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 AC103988.2-201ENST00000561804 725 ntBASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 AP001002.3-201ENST00000623482 206 ntBASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VPS29Q9UBQ0 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC012617.1-204ENST00000586340 2305 ntBASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 RN7SL837P-201ENST00000463010 287 ntBASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC025279.2-201ENST00000569730 653 ntBASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC025048.6-201ENST00000634326 1161 ntBASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS29Q9UBQ0 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS29Q9UBQ0 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms