Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CIITAP33076 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CIITAP33076 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.55■□□□□ 0.24
CIITAP33076 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.55■□□□□ 0.24
CIITAP33076 ST13P19-201ENST00000442505 1124 ntBASIC16.55■□□□□ 0.24
CIITAP33076 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.55■□□□□ 0.24
CIITAP33076 SCARNA20.5-201ENST00000516991 142 ntBASIC16.55■□□□□ 0.24
CIITAP33076 AC022217.1-201ENST00000521069 738 ntBASIC16.55■□□□□ 0.24
CIITAP33076 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.55■□□□□ 0.24
CIITAP33076 AC009779.1-201ENST00000551138 283 ntBASIC16.55■□□□□ 0.24
CIITAP33076 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 AL645939.5-201ENST00000606834 243 ntBASIC16.55■□□□□ 0.24
CIITAP33076 AL136295.7-201ENST00000619226 1200 ntBASIC16.55■□□□□ 0.24
CIITAP33076 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CIITAP33076 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CIITAP33076 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CIITAP33076 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CIITAP33076 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CIITAP33076 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.54■□□□□ 0.24
CIITAP33076 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 LINC00552-201ENST00000625151 2579 ntBASIC16.54■□□□□ 0.24
CIITAP33076 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CIITAP33076 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CIITAP33076 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 AC063926.3-201ENST00000624734 5658 ntBASIC16.54■□□□□ 0.24
CIITAP33076 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 KRT18P36-201ENST00000411618 1276 ntBASIC16.54■□□□□ 0.24
CIITAP33076 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.54■□□□□ 0.24
CIITAP33076 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.54■□□□□ 0.24
CIITAP33076 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.54■□□□□ 0.24
CIITAP33076 AC020914.3-201ENST00000594712 304 ntBASIC16.54■□□□□ 0.24
CIITAP33076 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.54■□□□□ 0.24
CIITAP33076 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CIITAP33076 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
CIITAP33076 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CIITAP33076 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CIITAP33076 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CIITAP33076 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CIITAP33076 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms