Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC20.77■□□□□ 0.913e-9■□□□□ 9.1
YBX3P16989 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.1■□□□□ 0.813e-9■□□□□ 9.1
YBX3P16989 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC20.03■□□□□ 0.83e-9■□□□□ 9.1
YBX3P16989 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC16.11■□□□□ 0.173e-9■□□□□ 9.1
YBX3P16989 HMBS-224ENST00000546226 2112 ntTSL 215.44■□□□□ 0.063e-9■□□□□ 9.1
YBX3P16989 HMBS-217ENST00000543543 1796 ntTSL 513.07□□□□□ -0.323e-9■□□□□ 9.1
YBX3P16989 EIF3B-204ENST00000431643 1074 ntTSL 522.26■■□□□ 1.153e-11■□□□□ 9.1
YBX3P16989 ERGIC1-211ENST00000523215 3621 ntTSL 1 (best)10.92□□□□□ -0.662e-9■□□□□ 9.1
YBX3P16989 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.78■□□□□ 0.762e-7■□□□□ 9.1
YBX3P16989 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.121e-8■□□□□ 9.1
YBX3P16989 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.012e-7■□□□□ 9.1
YBX3P16989 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.012e-7■□□□□ 9.1
YBX3P16989 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.082e-7■□□□□ 9.1
YBX3P16989 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC25.32■■□□□ 1.648e-9■□□□□ 9.1
YBX3P16989 DYNLRB1-204ENST00000480759 1053 ntTSL 313.68□□□□□ -0.228e-9■□□□□ 9.1
YBX3P16989 DYNLRB1-202ENST00000357156 675 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.768e-9■□□□□ 9.1
YBX3P16989 RPL18A-207ENST00000602216 907 ntTSL 222.12■■□□□ 1.131e-323■□□□□ 9.1
YBX3P16989 ERCC1-207ENST00000588738 586 ntTSL 224.27■■□□□ 1.483e-8■□□□□ 9.1
YBX3P16989 ERCC1-210ENST00000589381 738 ntTSL 523.4■■□□□ 1.343e-8■□□□□ 9.1
YBX3P16989 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC22.76■■□□□ 1.233e-8■□□□□ 9.1
YBX3P16989 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.64■■□□□ 1.053e-8■□□□□ 9.1
YBX3P16989 ERCC1-211ENST00000590701 345 ntTSL 320.9■□□□□ 0.943e-8■□□□□ 9.1
YBX3P16989 ERCC1-214ENST00000592083 938 ntTSL 520.9■□□□□ 0.943e-8■□□□□ 9.1
YBX3P16989 ERCC1-205ENST00000587888 556 ntTSL 519.51■□□□□ 0.713e-8■□□□□ 9.1
YBX3P16989 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC19.22■□□□□ 0.673e-8■□□□□ 9.1
YBX3P16989 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.53e-8■□□□□ 9.1
YBX3P16989 ERCC1-204ENST00000423698 3119 ntTSL 2 BASIC12.14□□□□□ -0.473e-8■□□□□ 9.1
YBX3P16989 ERCC1-202ENST00000300853 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.513e-8■□□□□ 9.1
YBX3P16989 ERCC1-216ENST00000592444 449 ntTSL 28.22□□□□□ -1.093e-8■□□□□ 9.1
YBX3P16989 ERCC1-215ENST00000592410 508 ntTSL 26.22□□□□□ -1.413e-8■□□□□ 9.1
YBX3P16989 EEF2-204ENST00000598182 581 ntTSL 218.1■□□□□ 0.492e-80■□□□□ 9.1
YBX3P16989 ALDOC-209ENST00000584086 686 ntTSL 319.34■□□□□ 0.697e-28■□□□□ 9.1
YBX3P16989 ALDOC-205ENST00000460201 922 ntTSL 218.21■□□□□ 0.517e-28■□□□□ 9.1
YBX3P16989 ALDOC-208ENST00000582381 571 ntTSL 217.27■□□□□ 0.367e-28■□□□□ 9.1
YBX3P16989 ALDOC-207ENST00000581807 580 ntTSL 317.16■□□□□ 0.347e-28■□□□□ 9.1
YBX3P16989 ALDOC-206ENST00000578590 839 ntTSL 413.79□□□□□ -0.27e-28■□□□□ 9.1
YBX3P16989 ALDOC-204ENST00000435638 579 ntTSL 313.23□□□□□ -0.297e-28■□□□□ 9.1
YBX3P16989 CDK4-214ENST00000552862 447 ntTSL 316.92■□□□□ 0.32e-13■□□□□ 9.1
YBX3P16989 PTPRF-211ENST00000467464 571 ntTSL 316.21■□□□□ 0.192e-9■□□□□ 9.1
YBX3P16989 UROD-208ENST00000463092 968 ntTSL 219.87■□□□□ 0.772e-11■□□□□ 9.1
YBX3P16989 UROD-218ENST00000491773 676 ntTSL 215.81■□□□□ 0.122e-11■□□□□ 9.1
YBX3P16989 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC8.39□□□□□ -1.076e-21■□□□□ 9.1
YBX3P16989 CHD4-206ENST00000536999 318 ntTSL 37.11□□□□□ -1.273e-8■□□□□ 9.1
YBX3P16989 EIF4A2-226ENST00000497177 849 ntTSL 56.53□□□□□ -1.363e-14■□□□□ 9.1
YBX3P16989 YWHAQ-205ENST00000474715 709 ntTSL 37.54□□□□□ -1.26e-9■□□□□ 9.1
YBX3P16989 SMC1A-205ENST00000469129 847 ntTSL 310.78□□□□□ -0.681e-7■□□□□ 9.1
YBX3P16989 EMC1-210ENST00000486405 583 ntTSL 29.19□□□□□ -0.947e-7■□□□□ 9.1
YBX3P16989 EMC1-209ENST00000486238 425 ntTSL 35.23□□□□□ -1.577e-7■□□□□ 9.1
YBX3P16989 IRAK1-207ENST00000443220 1175 ntTSL 218.15■□□□□ 0.59e-13■□□□□ 9.1
YBX3P16989 IRAK1-213ENST00000477274 705 ntTSL 516.68■□□□□ 0.269e-13■□□□□ 9.1
YBX3P16989 CCNC-219ENST00000627680 896 ntTSL 5 BASIC23.42■■□□□ 1.342e-8■□□□□ 9.1
YBX3P16989 ARF1-211ENST00000490705 881 ntTSL 317.48■□□□□ 0.391e-15■□□□□ 9.1
YBX3P16989 CLTC-208ENST00000496076 678 ntTSL 29.29□□□□□ -0.922e-10■□□□□ 9.1
YBX3P16989 PABPC1-209ENST00000519100 851 ntTSL 35.44□□□□□ -1.548e-36■□□□□ 9.1
YBX3P16989 NAP1L1-214ENST00000548273 818 ntTSL 317.92■□□□□ 0.461e-16■□□□□ 9.1
YBX3P16989 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC17.31■□□□□ 0.361e-16■□□□□ 9.1
YBX3P16989 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.361e-16■□□□□ 9.1
YBX3P16989 NAP1L1-217ENST00000549988 544 ntTSL 316.11■□□□□ 0.171e-16■□□□□ 9.1
YBX3P16989 NAP1L1-206ENST00000544816 1597 ntTSL 2 BASIC15.86■□□□□ 0.131e-16■□□□□ 9.1
YBX3P16989 NAP1L1-205ENST00000542344 1675 ntTSL 2 BASIC14.49□□□□□ -0.091e-16■□□□□ 9.1
YBX3P16989 NAP1L1-209ENST00000547704 760 ntTSL 514.46□□□□□ -0.091e-16■□□□□ 9.1
YBX3P16989 NAP1L1-221ENST00000551600 786 ntTSL 514.46□□□□□ -0.091e-16■□□□□ 9.1
YBX3P16989 NAP1L1-213ENST00000548044 1339 ntTSL 5 BASIC13.7□□□□□ -0.221e-16■□□□□ 9.1
YBX3P16989 NAP1L1-210ENST00000547773 1967 ntTSL 5 BASIC13.61□□□□□ -0.231e-16■□□□□ 9.1
YBX3P16989 NAP1L1-215ENST00000549479 573 ntTSL 213.3□□□□□ -0.281e-16■□□□□ 9.1
YBX3P16989 NAP1L1-207ENST00000547479 623 ntTSL 513.27□□□□□ -0.291e-16■□□□□ 9.1
YBX3P16989 NAP1L1-216ENST00000549596 1838 ntTSL 2 BASIC11.25□□□□□ -0.611e-16■□□□□ 9.1
YBX3P16989 NAP1L1-203ENST00000431879 2031 ntTSL 2 BASIC10.57□□□□□ -0.721e-16■□□□□ 9.1
YBX3P16989 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC8.4□□□□□ -1.071e-16■□□□□ 9.1
YBX3P16989 NAP1L1-219ENST00000551500 552 ntTSL 1 (best)8.23□□□□□ -1.091e-16■□□□□ 9.1
YBX3P16989 NAP1L1-218ENST00000550934 851 ntTSL 57.3□□□□□ -1.241e-16■□□□□ 9.1
YBX3P16989 MARS-226ENST00000551892 748 ntTSL 326.94■■□□□ 1.94e-10■□□□□ 9.1
YBX3P16989 MARS-202ENST00000447721 1328 ntTSL 224.89■■□□□ 1.584e-10■□□□□ 9.1
YBX3P16989 MARS-213ENST00000548674 749 ntTSL 520.97■□□□□ 0.954e-10■□□□□ 9.1
YBX3P16989 MARS-228ENST00000552371 699 ntTSL 315.41■□□□□ 0.064e-10■□□□□ 9.1
YBX3P16989 CDC34-203ENST00000586788 900 ntTSL 232.88■■■□□ 2.851e-8■□□□□ 9.1
YBX3P16989 BRI3-204ENST00000474291 472 ntTSL 226.12■■□□□ 1.772e-15■□□□□ 9.1
YBX3P16989 STK35-202ENST00000493263 1595 ntTSL 1 (best)24.83■■□□□ 1.579e-8■□□□□ 9.1
YBX3P16989 ADGRD1-214ENST00000543826 708 ntTSL 318.29■□□□□ 0.529e-8■□□□□ 9.1
YBX3P16989 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.219e-8■□□□□ 9.1
YBX3P16989 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.269e-8■□□□□ 9.1
YBX3P16989 ADGRD1-210ENST00000541143 7085 ntTSL 211.58□□□□□ -0.569e-8■□□□□ 9.1
YBX3P16989 ADGRD1-205ENST00000535015 2776 ntTSL 1 (best) BASIC10.89□□□□□ -0.679e-8■□□□□ 9.1
YBX3P16989 ADGRD1-212ENST00000542091 735 ntTSL 39.08□□□□□ -0.969e-8■□□□□ 9.1
YBX3P16989 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.681e-26■□□□□ 9.1
YBX3P16989 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.271e-26■□□□□ 9.1
YBX3P16989 FAM178B-202ENST00000470789 722 ntTSL 1 (best)14.82□□□□□ -0.041e-26■□□□□ 9.1
YBX3P16989 EIF3D-207ENST00000457241 729 ntTSL 218.97■□□□□ 0.632e-13■□□□□ 9.1
YBX3P16989 EIF3D-205ENST00000432675 678 ntTSL 213.36□□□□□ -0.272e-13■□□□□ 9.1
YBX3P16989 EIF3D-212ENST00000496875 604 ntTSL 413.02□□□□□ -0.332e-13■□□□□ 9.1
YBX3P16989 POLD2-211ENST00000464871 580 ntTSL 326.81■■□□□ 1.882e-7■□□□□ 9.1
YBX3P16989 POLD2-212ENST00000467469 528 ntTSL 321.61■■□□□ 1.052e-7■□□□□ 9.1
YBX3P16989 POLD2-209ENST00000461116 420 ntTSL 217.92■□□□□ 0.462e-7■□□□□ 9.1
YBX3P16989 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.255e-6■□□□□ 9.1
YBX3P16989 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.346e-11■□□□□ 9.1
YBX3P16989 HMGN1-206ENST00000431390 1552 ntTSL 322.9■■□□□ 1.266e-11■□□□□ 9.1
YBX3P16989 HMGN1-216ENST00000486741 4299 ntTSL 213.64□□□□□ -0.236e-11■□□□□ 9.1
YBX3P16989 HMGN1-220ENST00000492280 2707 ntTSL 513.09□□□□□ -0.316e-11■□□□□ 9.1
YBX3P16989 HMGN1-201ENST00000288344 1303 ntTSL 211.95□□□□□ -0.56e-11■□□□□ 9.1
YBX3P16989 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.553e-9■□□□□ 9.1
Retrieved 100 of 29,075 protein–RNA pairs in 107 ms