Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
NPHP1O15259 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPHP1O15259 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.65■□□□□ 0.58
NPHP1O15259 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
NPHP1O15259 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.64■□□□□ 0.58
NPHP1O15259 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NPHP1O15259 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NPHP1O15259 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
NPHP1O15259 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
NPHP1O15259 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.64■□□□□ 0.57
NPHP1O15259 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 RN7SKP230-201ENST00000365642 335 ntBASIC18.64■□□□□ 0.57
NPHP1O15259 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.64■□□□□ 0.57
NPHP1O15259 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC18.64■□□□□ 0.57
NPHP1O15259 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
NPHP1O15259 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC18.64■□□□□ 0.57
NPHP1O15259 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 FAM90A7P-201ENST00000382628 1395 ntBASIC18.64■□□□□ 0.57
NPHP1O15259 FAM90A23P-201ENST00000400136 1395 ntBASIC18.64■□□□□ 0.57
NPHP1O15259 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
NPHP1O15259 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.64■□□□□ 0.57
NPHP1O15259 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.64■□□□□ 0.57
NPHP1O15259 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPHP1O15259 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
NPHP1O15259 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.63■□□□□ 0.57
NPHP1O15259 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC18.63■□□□□ 0.57
NPHP1O15259 AC078875.1-201ENST00000431907 724 ntBASIC18.63■□□□□ 0.57
NPHP1O15259 AC078991.1-201ENST00000437297 610 ntBASIC18.63■□□□□ 0.57
NPHP1O15259 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.63■□□□□ 0.57
NPHP1O15259 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.63■□□□□ 0.57
NPHP1O15259 PGAM1P5-201ENST00000548011 764 ntBASIC18.63■□□□□ 0.57
NPHP1O15259 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.63■□□□□ 0.57
NPHP1O15259 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
NPHP1O15259 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.63■□□□□ 0.57
NPHP1O15259 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.63■□□□□ 0.57
NPHP1O15259 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.63■□□□□ 0.57
NPHP1O15259 AL138725.1-201ENST00000407347 1314 ntBASIC18.63■□□□□ 0.57
NPHP1O15259 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.63■□□□□ 0.57
NPHP1O15259 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.63■□□□□ 0.57
NPHP1O15259 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.63■□□□□ 0.57
NPHP1O15259 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.63■□□□□ 0.57
NPHP1O15259 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
NPHP1O15259 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.63■□□□□ 0.57
NPHP1O15259 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPHP1O15259 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
NPHP1O15259 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
NPHP1O15259 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.62■□□□□ 0.57
NPHP1O15259 RPS9P1-201ENST00000419943 583 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.62■□□□□ 0.57
NPHP1O15259 AL592076.1-201ENST00000424448 303 ntBASIC18.62■□□□□ 0.57
NPHP1O15259 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.62■□□□□ 0.57
NPHP1O15259 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPHP1O15259 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms