Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.82■□□□□ 0.12
FOXN3O00409 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXN3O00409 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXN3O00409 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXN3O00409 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 AC006001.1-201ENST00000325130 474 ntBASIC15.81■□□□□ 0.12
FOXN3O00409 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
FOXN3O00409 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
FOXN3O00409 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.81■□□□□ 0.12
FOXN3O00409 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.81■□□□□ 0.12
FOXN3O00409 KRT90P-201ENST00000549264 1064 ntBASIC15.81■□□□□ 0.12
FOXN3O00409 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
FOXN3O00409 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
FOXN3O00409 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXN3O00409 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXN3O00409 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXN3O00409 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
FOXN3O00409 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.8■□□□□ 0.12
FOXN3O00409 AL035633.1-201ENST00000406139 838 ntBASIC15.8■□□□□ 0.12
FOXN3O00409 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.8■□□□□ 0.12
FOXN3O00409 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.8■□□□□ 0.12
FOXN3O00409 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
FOXN3O00409 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.8■□□□□ 0.12
FOXN3O00409 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
FOXN3O00409 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.8■□□□□ 0.12
FOXN3O00409 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 AC073413.1-201ENST00000603927 732 ntBASIC15.8■□□□□ 0.12
FOXN3O00409 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.8■□□□□ 0.12
FOXN3O00409 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.8■□□□□ 0.12
FOXN3O00409 AC138951.2-201ENST00000623455 1161 ntBASIC15.8■□□□□ 0.12
FOXN3O00409 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 AC002472.3-201ENST00000640124 621 ntBASIC15.8■□□□□ 0.12
FOXN3O00409 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms