Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM1O00151 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
PDLIM1O00151 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM1O00151 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM1O00151 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PDLIM1O00151 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PDLIM1O00151 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
PDLIM1O00151 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC14.19□□□□□ -0.14
PDLIM1O00151 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM1O00151 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PDLIM1O00151 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM1O00151 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PDLIM1O00151 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
PDLIM1O00151 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM1O00151 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM1O00151 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM1O00151 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM1O00151 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 CETN4P-206ENST00000642099 2168 ntBASIC14.18□□□□□ -0.14
PDLIM1O00151 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.18□□□□□ -0.14
PDLIM1O00151 AL080243.2-201ENST00000418783 582 ntBASIC14.18□□□□□ -0.14
PDLIM1O00151 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.18□□□□□ -0.14
PDLIM1O00151 HMGN1P19-201ENST00000436976 333 ntBASIC14.18□□□□□ -0.14
PDLIM1O00151 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
PDLIM1O00151 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.18□□□□□ -0.14
PDLIM1O00151 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.18□□□□□ -0.14
PDLIM1O00151 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.18□□□□□ -0.14
PDLIM1O00151 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM1O00151 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM1O00151 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM1O00151 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM1O00151 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM1O00151 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
PDLIM1O00151 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
PDLIM1O00151 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM1O00151 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 RPL37AP1-201ENST00000412502 279 ntBASIC14.17□□□□□ -0.14
PDLIM1O00151 MTND6P24-201ENST00000440466 518 ntBASIC14.17□□□□□ -0.14
PDLIM1O00151 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM1O00151 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM1O00151 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM1O00151 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM1O00151 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM1O00151 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM1O00151 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM1O00151 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
PDLIM1O00151 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.17□□□□□ -0.14
PDLIM1O00151 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
PDLIM1O00151 AL589739.1-201ENST00000607720 493 ntBASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms