Protein–RNA interactions for Protein: Q9Y3E1

HDGFL3, Hepatoma-derived growth factor-related protein 3, humanhuman

Predictions only

Length 203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3Q9Y3E1 AL035414.1-201ENST00000451327 857 ntBASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AC103988.2-201ENST00000561804 725 ntBASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 DUX4L45-201ENST00000566406 1057 ntBASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 LINC00552-201ENST00000625151 2579 ntBASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 AC007686.3-201ENST00000619017 3487 ntBASIC13.32□□□□□ -0.28
HDGFL3Q9Y3E1 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MIR658-201ENST00000385210 100 ntBASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AC099336.1-201ENST00000417053 1171 ntBASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 ATP5G2P4-201ENST00000442175 420 ntBASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MIR4683-201ENST00000579659 81 ntBASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AL358472.3-201ENST00000608147 415 ntBASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AC139712.1-201ENST00000378256 1875 ntBASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AC015688.4-201ENST00000580780 1647 ntBASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HDGFL3Q9Y3E1 AL137784.3-201ENST00000623858 2288 ntBASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 AL590440.2-201ENST00000641973 1595 ntBASIC13.3□□□□□ -0.28
HDGFL3Q9Y3E1 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms