Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 GPAA1P2-201ENST00000417923 928 ntBASIC14.45□□□□□ -0.1
VPS4AQ9UN37 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 AC004066.1-201ENST00000502488 802 ntBASIC14.45□□□□□ -0.1
VPS4AQ9UN37 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.45□□□□□ -0.1
VPS4AQ9UN37 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 AC079316.1-201ENST00000548397 411 ntBASIC14.45□□□□□ -0.1
VPS4AQ9UN37 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VPS4AQ9UN37 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 GRK6P1-201ENST00000400595 1711 ntBASIC14.44□□□□□ -0.1
VPS4AQ9UN37 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.44□□□□□ -0.1
VPS4AQ9UN37 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 MIR1247-201ENST00000408206 136 ntBASIC14.44□□□□□ -0.1
VPS4AQ9UN37 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AC091271.1-201ENST00000611877 1162 ntBASIC14.44□□□□□ -0.1
VPS4AQ9UN37 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 PPA1-206ENST00000625364 644 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS4AQ9UN37 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms