Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.92■□□□□ 0.3
USP28Q96RU2 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.92■□□□□ 0.3
USP28Q96RU2 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USP28Q96RU2 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 OR2I1P-209ENST00000641730 5365 ntBASIC16.91■□□□□ 0.3
USP28Q96RU2 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
USP28Q96RU2 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 AC010319.3-201ENST00000597028 470 ntBASIC16.91■□□□□ 0.3
USP28Q96RU2 BX088702.1-201ENST00000610784 235 ntBASIC16.91■□□□□ 0.3
USP28Q96RU2 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.91■□□□□ 0.3
USP28Q96RU2 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
USP28Q96RU2 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.91■□□□□ 0.3
USP28Q96RU2 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.91■□□□□ 0.3
USP28Q96RU2 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 TCAM1P-207ENST00000485295 1537 ntBASIC16.91■□□□□ 0.3
USP28Q96RU2 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.91■□□□□ 0.3
USP28Q96RU2 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
USP28Q96RU2 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
USP28Q96RU2 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
USP28Q96RU2 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.9■□□□□ 0.3
USP28Q96RU2 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
USP28Q96RU2 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
USP28Q96RU2 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.9■□□□□ 0.3
USP28Q96RU2 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.9■□□□□ 0.3
USP28Q96RU2 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.9■□□□□ 0.3
USP28Q96RU2 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.9■□□□□ 0.3
USP28Q96RU2 FTLP10-202ENST00000505798 471 ntBASIC16.9■□□□□ 0.3
USP28Q96RU2 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.9■□□□□ 0.3
USP28Q96RU2 AC068587.3-201ENST00000526613 355 ntBASIC16.9■□□□□ 0.3
USP28Q96RU2 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
USP28Q96RU2 TDH-203ENST00000531764 1110 ntBASIC16.9■□□□□ 0.3
USP28Q96RU2 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.9■□□□□ 0.3
USP28Q96RU2 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.9■□□□□ 0.3
USP28Q96RU2 RN7SL48P-201ENST00000579283 293 ntBASIC16.9■□□□□ 0.3
USP28Q96RU2 GNRHR2-203ENST00000581100 1187 ntBASIC16.9■□□□□ 0.3
USP28Q96RU2 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.9■□□□□ 0.3
USP28Q96RU2 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.9■□□□□ 0.3
USP28Q96RU2 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
USP28Q96RU2 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.9■□□□□ 0.3
USP28Q96RU2 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
USP28Q96RU2 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
USP28Q96RU2 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USP28Q96RU2 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
USP28Q96RU2 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
USP28Q96RU2 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
USP28Q96RU2 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms