Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RIPK4P57078 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC19.29■□□□□ 0.68
RIPK4P57078 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC19.29■□□□□ 0.68
RIPK4P57078 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.29■□□□□ 0.68
RIPK4P57078 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RIPK4P57078 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC19.29■□□□□ 0.68
RIPK4P57078 VDAC1P1-201ENST00000439229 848 ntBASIC19.29■□□□□ 0.68
RIPK4P57078 KRT8P13-201ENST00000463294 1010 ntBASIC19.29■□□□□ 0.68
RIPK4P57078 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 AL160314.3-201ENST00000556041 767 ntBASIC19.29■□□□□ 0.68
RIPK4P57078 EID1-202ENST00000560490 584 ntTSL 3 BASIC19.29■□□□□ 0.68
RIPK4P57078 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RIPK4P57078 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.29■□□□□ 0.68
RIPK4P57078 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 AC136759.1-202ENST00000530858 2194 ntBASIC19.29■□□□□ 0.68
RIPK4P57078 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC19.29■□□□□ 0.68
RIPK4P57078 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RIPK4P57078 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 MYADML-201ENST00000474610 2147 ntBASIC19.28■□□□□ 0.68
RIPK4P57078 FAS-202ENST00000352159 1722 ntTSL 5 BASIC19.28■□□□□ 0.68
RIPK4P57078 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.28■□□□□ 0.68
RIPK4P57078 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
RIPK4P57078 AC009884.2-201ENST00000603110 324 ntBASIC19.28■□□□□ 0.68
RIPK4P57078 RPL35-206ENST00000629845 340 ntTSL 5 BASIC19.28■□□□□ 0.68
RIPK4P57078 AC068587.8-201ENST00000641239 219 ntBASIC19.28■□□□□ 0.68
RIPK4P57078 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RIPK4P57078 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 AC097359.2-201ENST00000604992 2389 ntBASIC19.28■□□□□ 0.68
RIPK4P57078 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RIPK4P57078 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC19.28■□□□□ 0.68
RIPK4P57078 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RIPK4P57078 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 AC009093.10-201ENST00000641956 1442 ntBASIC19.27■□□□□ 0.68
RIPK4P57078 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC19.27■□□□□ 0.68
RIPK4P57078 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.27■□□□□ 0.68
RIPK4P57078 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC19.27■□□□□ 0.68
RIPK4P57078 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC19.27■□□□□ 0.68
RIPK4P57078 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 RN7SL163P-201ENST00000583100 276 ntBASIC19.27■□□□□ 0.68
RIPK4P57078 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
RIPK4P57078 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC19.27■□□□□ 0.68
RIPK4P57078 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RIPK4P57078 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RIPK4P57078 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
RIPK4P57078 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC19.27■□□□□ 0.67
RIPK4P57078 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RIPK4P57078 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
RIPK4P57078 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC19.27■□□□□ 0.67
RIPK4P57078 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms