Protein–RNA interactions for Protein: P56880

CLDN20, Claudin-20, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN20P56880 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CLDN20P56880 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.65□□□□□ -0.22
CLDN20P56880 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLDN20P56880 COL6A4P2-202ENST00000504443 2753 ntBASIC13.65□□□□□ -0.22
CLDN20P56880 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLDN20P56880 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.23
CLDN20P56880 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.23
CLDN20P56880 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
CLDN20P56880 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 PTENP1-202ENST00000532280 3996 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 WASH3P-207ENST00000560956 1394 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 CNN2P8-201ENST00000421872 913 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.64□□□□□ -0.23
CLDN20P56880 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.64□□□□□ -0.23
CLDN20P56880 AC244107.1-201ENST00000442033 332 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 KRT223P-202ENST00000449164 1292 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.64□□□□□ -0.23
CLDN20P56880 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.64□□□□□ -0.23
CLDN20P56880 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 AC078819.1-201ENST00000547454 765 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 AC012085.1-201ENST00000548270 765 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.64□□□□□ -0.23
CLDN20P56880 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.64□□□□□ -0.23
CLDN20P56880 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.64□□□□□ -0.23
CLDN20P56880 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.64□□□□□ -0.23
CLDN20P56880 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 AC132938.4-201ENST00000623835 848 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 AC099521.3-201ENST00000624251 2938 ntBASIC13.64□□□□□ -0.23
CLDN20P56880 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CLDN20P56880 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.64□□□□□ -0.23
CLDN20P56880 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLDN20P56880 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
CLDN20P56880 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.63□□□□□ -0.23
CLDN20P56880 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CLDN20P56880 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.63□□□□□ -0.23
CLDN20P56880 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.63□□□□□ -0.23
CLDN20P56880 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CLDN20P56880 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLDN20P56880 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms