Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.52□□□□□ -0.08
CXCL12P48061 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.52□□□□□ -0.08
CXCL12P48061 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.52□□□□□ -0.08
CXCL12P48061 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.52□□□□□ -0.08
CXCL12P48061 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.08
CXCL12P48061 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 SSR4P1-203ENST00000599569 2260 ntBASIC14.52□□□□□ -0.08
CXCL12P48061 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.52□□□□□ -0.08
CXCL12P48061 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL12P48061 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 AC098934.1-203ENST00000442868 1262 ntBASIC14.52□□□□□ -0.09
CXCL12P48061 DDX39AP1-201ENST00000445147 1181 ntBASIC14.52□□□□□ -0.09
CXCL12P48061 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC14.52□□□□□ -0.09
CXCL12P48061 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC14.52□□□□□ -0.09
CXCL12P48061 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.52□□□□□ -0.09
CXCL12P48061 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC14.52□□□□□ -0.09
CXCL12P48061 AL118516.1-201ENST00000564152 670 ntBASIC14.52□□□□□ -0.09
CXCL12P48061 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
CXCL12P48061 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 AC139712.1-201ENST00000378256 1875 ntBASIC14.52□□□□□ -0.09
CXCL12P48061 AC020658.6-201ENST00000623564 1870 ntBASIC14.52□□□□□ -0.09
CXCL12P48061 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
CXCL12P48061 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.52□□□□□ -0.09
CXCL12P48061 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.52□□□□□ -0.09
CXCL12P48061 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
CXCL12P48061 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL12P48061 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
CXCL12P48061 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CXCL12P48061 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC14.51□□□□□ -0.09
CXCL12P48061 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC14.51□□□□□ -0.09
CXCL12P48061 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC14.51□□□□□ -0.09
CXCL12P48061 AP005212.2-201ENST00000584979 510 ntBASIC14.51□□□□□ -0.09
CXCL12P48061 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.51□□□□□ -0.09
CXCL12P48061 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL12P48061 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CXCL12P48061 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL12P48061 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL12P48061 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms