Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 AC127383.1-201ENST00000444697 1800 ntBASIC14.85□□□□□ -0.03
VCANP13611 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 U3.41-201ENST00000408711 219 ntBASIC14.85□□□□□ -0.03
VCANP13611 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.85□□□□□ -0.03
VCANP13611 AC132812.1-201ENST00000583145 892 ntBASIC14.85□□□□□ -0.03
VCANP13611 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC14.85□□□□□ -0.03
VCANP13611 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.85□□□□□ -0.03
VCANP13611 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.85□□□□□ -0.03
VCANP13611 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 RN7SL530P-201ENST00000485097 298 ntBASIC14.85□□□□□ -0.03
VCANP13611 OR52V1P-201ENST00000515557 898 ntBASIC14.85□□□□□ -0.03
VCANP13611 VENTXP3-201ENST00000546480 773 ntBASIC14.85□□□□□ -0.03
VCANP13611 AC010551.3-201ENST00000563772 463 ntTSL 5 BASIC14.85□□□□□ -0.03
VCANP13611 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC14.85□□□□□ -0.03
VCANP13611 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VCANP13611 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
VCANP13611 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 CCNL2P1-201ENST00000512846 969 ntBASIC14.84□□□□□ -0.03
VCANP13611 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 KRT8P1-201ENST00000557533 1207 ntBASIC14.84□□□□□ -0.03
VCANP13611 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC14.84□□□□□ -0.03
VCANP13611 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 LINC00244-201ENST00000625073 613 ntBASIC14.84□□□□□ -0.03
VCANP13611 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 AP000845.1-201ENST00000581677 2131 ntBASIC14.84□□□□□ -0.03
VCANP13611 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC14.84□□□□□ -0.03
VCANP13611 AC000077.1-201ENST00000420012 953 ntBASIC14.84□□□□□ -0.03
VCANP13611 AL359092.2-201ENST00000423330 585 ntBASIC14.84□□□□□ -0.03
VCANP13611 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 AC099343.1-201ENST00000513481 609 ntBASIC14.84□□□□□ -0.03
VCANP13611 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC14.84□□□□□ -0.03
VCANP13611 KRT8P34-201ENST00000577607 1044 ntBASIC14.84□□□□□ -0.03
VCANP13611 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VCANP13611 RPL13AP3-202ENST00000494676 1473 ntBASIC14.84□□□□□ -0.03
VCANP13611 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VCANP13611 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.84□□□□□ -0.03
VCANP13611 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
VCANP13611 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms