Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AL121894.2-201ENST00000602977 491 ntBASIC16.41■□□□□ 0.22
TPM1P09493 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.41■□□□□ 0.22
TPM1P09493 AC073592.8-201ENST00000624126 511 ntBASIC16.41■□□□□ 0.22
TPM1P09493 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 CR383656.2-201ENST00000548656 2254 ntBASIC16.41■□□□□ 0.22
TPM1P09493 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 AL591122.2-201ENST00000624125 1853 ntBASIC16.41■□□□□ 0.22
TPM1P09493 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC16.41■□□□□ 0.22
TPM1P09493 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 TUBB3P1-201ENST00000405796 1332 ntBASIC16.41■□□□□ 0.22
TPM1P09493 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.41■□□□□ 0.22
TPM1P09493 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.41■□□□□ 0.22
TPM1P09493 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TPM1P09493 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
TPM1P09493 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TPM1P09493 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 AC015818.8-201ENST00000587907 1519 ntBASIC16.4■□□□□ 0.22
TPM1P09493 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 SON-203ENST00000381679 7860 ntTSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC16.4■□□□□ 0.22
TPM1P09493 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TPM1P09493 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.4■□□□□ 0.22
TPM1P09493 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.4■□□□□ 0.22
TPM1P09493 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.4■□□□□ 0.22
TPM1P09493 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 HADH-202ENST00000403312 1752 ntTSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 AC016397.2-201ENST00000624848 1985 ntBASIC16.4■□□□□ 0.22
TPM1P09493 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 AC093525.8-201ENST00000624099 1342 ntBASIC16.4■□□□□ 0.22
TPM1P09493 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM1P09493 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TPM1P09493 AC105206.1-202ENST00000314927 2368 ntBASIC16.4■□□□□ 0.22
TPM1P09493 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
TPM1P09493 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.39■□□□□ 0.21
TPM1P09493 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 LSS-211ENST00000522411 2523 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM1P09493 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TPM1P09493 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.39■□□□□ 0.21
TPM1P09493 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
TPM1P09493 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 HLA-K-203ENST00000430151 1046 ntBASIC16.39■□□□□ 0.21
TPM1P09493 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.39■□□□□ 0.21
TPM1P09493 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.39■□□□□ 0.21
TPM1P09493 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.39■□□□□ 0.21
TPM1P09493 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM1P09493 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM1P09493 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM1P09493 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.39■□□□□ 0.21
TPM1P09493 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms