Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 SERBP1P3-201ENST00000459980 809 ntBASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 TMEM198B-204ENST00000484016 896 ntBASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 ALG1L8P-201ENST00000533887 760 ntBASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 AC131902.2-201ENST00000566892 2172 ntBASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.49□□□□□ -0.41
KCNIP3Q9Y2W7 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 AL121723.1-201ENST00000445194 1519 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 AC015818.8-201ENST00000587907 1519 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MIR1224-201ENST00000408193 85 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 TOMM22P5-201ENST00000416399 439 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 AC074338.1-201ENST00000416825 156 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MTND6P24-201ENST00000440466 518 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 BANF1P1-201ENST00000553684 263 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 CITED2-204ENST00000618718 901 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
KCNIP3Q9Y2W7 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
KCNIP3Q9Y2W7 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms