Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC104073.2-201ENST00000453737 312 ntBASIC17.35■□□□□ 0.37
NUP88Q99567 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 SDHD-202ENST00000525291 790 ntTSL 3 BASIC17.35■□□□□ 0.37
NUP88Q99567 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.35■□□□□ 0.37
NUP88Q99567 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.35■□□□□ 0.37
NUP88Q99567 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.35■□□□□ 0.37
NUP88Q99567 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.35■□□□□ 0.37
NUP88Q99567 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.35■□□□□ 0.37
NUP88Q99567 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.35■□□□□ 0.37
NUP88Q99567 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.35■□□□□ 0.37
NUP88Q99567 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
NUP88Q99567 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.35■□□□□ 0.37
NUP88Q99567 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.35■□□□□ 0.37
NUP88Q99567 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.35■□□□□ 0.37
NUP88Q99567 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.35■□□□□ 0.37
NUP88Q99567 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.35■□□□□ 0.37
NUP88Q99567 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.35■□□□□ 0.37
NUP88Q99567 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.35■□□□□ 0.37
NUP88Q99567 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NUP88Q99567 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.35■□□□□ 0.37
NUP88Q99567 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NUP88Q99567 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.34■□□□□ 0.37
NUP88Q99567 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC17.34■□□□□ 0.37
NUP88Q99567 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NUP88Q99567 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
NUP88Q99567 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.34■□□□□ 0.37
NUP88Q99567 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NUP88Q99567 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 CYP46A4P-201ENST00000414953 267 ntBASIC17.34■□□□□ 0.37
NUP88Q99567 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.34■□□□□ 0.37
NUP88Q99567 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.34■□□□□ 0.37
NUP88Q99567 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.34■□□□□ 0.37
NUP88Q99567 KLF2P1-201ENST00000447438 1042 ntBASIC17.34■□□□□ 0.37
NUP88Q99567 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.34■□□□□ 0.37
NUP88Q99567 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.34■□□□□ 0.37
NUP88Q99567 WASH3P-207ENST00000560956 1394 ntBASIC17.34■□□□□ 0.37
NUP88Q99567 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC17.34■□□□□ 0.37
NUP88Q99567 NDUFV2P1-201ENST00000596415 907 ntBASIC17.34■□□□□ 0.37
NUP88Q99567 AC084346.2-201ENST00000607097 949 ntBASIC17.34■□□□□ 0.37
NUP88Q99567 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NUP88Q99567 AC138649.2-201ENST00000615886 705 ntBASIC17.34■□□□□ 0.37
NUP88Q99567 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.34■□□□□ 0.37
NUP88Q99567 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
NUP88Q99567 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NUP88Q99567 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.33■□□□□ 0.37
NUP88Q99567 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.33■□□□□ 0.37
NUP88Q99567 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.33■□□□□ 0.37
NUP88Q99567 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
NUP88Q99567 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 SALL4P5-201ENST00000419001 1760 ntBASIC17.33■□□□□ 0.37
NUP88Q99567 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.33■□□□□ 0.37
NUP88Q99567 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
NUP88Q99567 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
NUP88Q99567 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NUP88Q99567 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
NUP88Q99567 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC17.33■□□□□ 0.36
NUP88Q99567 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP88Q99567 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 DPM3-202ENST00000368399 517 ntBASIC17.33■□□□□ 0.36
NUP88Q99567 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC17.33■□□□□ 0.36
NUP88Q99567 SPTLC1P5-201ENST00000450718 252 ntBASIC17.33■□□□□ 0.36
NUP88Q99567 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP88Q99567 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NUP88Q99567 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.33■□□□□ 0.36
NUP88Q99567 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms