Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 C1QBPP1-201ENST00000400117 770 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC007969.1-201ENST00000433675 447 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC023310.3-201ENST00000557027 670 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC100756.1-201ENST00000562736 682 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC138749.3-201ENST00000567691 622 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC116165.1-201ENST00000611806 668 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 KRT8P22-201ENST00000562317 1415 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 AC152010.1-201ENST00000415779 2006 ntBASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC54Q8NEL0 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CSPG4P11-201ENST00000560634 4910 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 AL391825.1-201ENST00000457671 1364 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 OSM-203ENST00000403463 464 ntTSL 3 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 SOCS2P1-201ENST00000417727 557 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13□□□□□ -0.33
CCDC54Q8NEL0 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC54Q8NEL0 ENPP7P5-201ENST00000541031 1031 ntBASIC13□□□□□ -0.33
CCDC54Q8NEL0 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms