Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 AL133267.1-201ENST00000398220 340 ntBASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PIN1P1-201ENST00000412108 996 ntBASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 TSSK5P-201ENST00000423978 907 ntBASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 UGT1A2P-201ENST00000454886 866 ntBASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 HTR4-207ENST00000520514 1236 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.94□□□□□ -0.18
DEPDC4Q8N2C3 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AC022447.6-201ENST00000515522 438 ntBASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 RAB30-AS1-205ENST00000530270 1116 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 BANF1P1-201ENST00000553684 263 ntBASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
DEPDC4Q8N2C3 LILRP1-201ENST00000444199 1370 ntBASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms