Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
TFF3Q07654 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.02□□□□□ -0.32
TFF3Q07654 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
TFF3Q07654 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
TFF3Q07654 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.02□□□□□ -0.32
TFF3Q07654 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.02□□□□□ -0.33
TFF3Q07654 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
TFF3Q07654 SCARNA21-201ENST00000517026 139 ntBASIC13.02□□□□□ -0.33
TFF3Q07654 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.02□□□□□ -0.33
TFF3Q07654 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.02□□□□□ -0.33
TFF3Q07654 NPM1P43-201ENST00000558669 786 ntBASIC13.02□□□□□ -0.33
TFF3Q07654 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.02□□□□□ -0.33
TFF3Q07654 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
TFF3Q07654 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.02□□□□□ -0.33
TFF3Q07654 MIR4750-201ENST00000584564 56 ntBASIC13.02□□□□□ -0.33
TFF3Q07654 WDR7-208ENST00000589935 544 ntTSL 4 BASIC13.02□□□□□ -0.33
TFF3Q07654 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.02□□□□□ -0.33
TFF3Q07654 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.02□□□□□ -0.33
TFF3Q07654 COX6A1P2-201ENST00000620597 330 ntBASIC13.02□□□□□ -0.33
TFF3Q07654 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.02□□□□□ -0.33
TFF3Q07654 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC13.02□□□□□ -0.33
TFF3Q07654 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
TFF3Q07654 AC006486.2-201ENST00000624246 2199 ntBASIC13.02□□□□□ -0.33
TFF3Q07654 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
TFF3Q07654 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
TFF3Q07654 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.02□□□□□ -0.33
TFF3Q07654 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 TBC1D3J-201ENST00000620719 1426 ntBASIC13.02□□□□□ -0.33
TFF3Q07654 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC13.02□□□□□ -0.33
TFF3Q07654 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.02□□□□□ -0.33
TFF3Q07654 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
TFF3Q07654 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
TFF3Q07654 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TFF3Q07654 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 AC105250.1-201ENST00000509378 2057 ntBASIC13.01□□□□□ -0.33
TFF3Q07654 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.01□□□□□ -0.33
TFF3Q07654 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
TFF3Q07654 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 AC239868.1-201ENST00000369385 493 ntBASIC13.01□□□□□ -0.33
TFF3Q07654 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.01□□□□□ -0.33
TFF3Q07654 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.01□□□□□ -0.33
TFF3Q07654 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.01□□□□□ -0.33
TFF3Q07654 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.01□□□□□ -0.33
TFF3Q07654 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.01□□□□□ -0.33
TFF3Q07654 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TFF3Q07654 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms