Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 IFNLR1-201ENST00000327535 4549 ntAPPRIS P4 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 TMEM147-AS1-205ENST00000590717 3300 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 BSG-215ENST00000618006 1329 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 HECW1-201ENST00000395891 9501 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 AC026992.2-203ENST00000563004 2419 ntBASIC10.52□□□□□ -0.73
CKS1BP61024 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
CKS1BP61024 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
CKS1BP61024 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 KRT8P37-201ENST00000451609 1420 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 KDM5B-203ENST00000367265 10345 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 ZNF25-201ENST00000302609 4139 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 DPP3-211ENST00000532677 3078 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 LINC00477-201ENST00000483544 1710 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 FBXO22-201ENST00000308275 10725 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 BEX3-201ENST00000361298 921 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC10.51□□□□□ -0.73
CKS1BP61024 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC10.51□□□□□ -0.73
CKS1BP61024 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC10.51□□□□□ -0.73
CKS1BP61024 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC10.51□□□□□ -0.73
CKS1BP61024 PHKG1P2-201ENST00000457537 863 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
CKS1BP61024 AC074386.1-202ENST00000463561 864 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 KRT19P2-202ENST00000557173 1012 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC10.51□□□□□ -0.73
CKS1BP61024 RARRES2P8-201ENST00000566335 367 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 AC061975.2-201ENST00000581722 295 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 Z83851.2-201ENST00000609564 659 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 AL691432.3-201ENST00000621860 400 ntBASIC10.51□□□□□ -0.73
CKS1BP61024 PAX8-205ENST00000429538 4084 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 PID1-203ENST00000392055 2533 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
CKS1BP61024 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC10.51□□□□□ -0.73
CKS1BP61024 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
CKS1BP61024 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC10.51□□□□□ -0.73
CKS1BP61024 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC10.51□□□□□ -0.73
CKS1BP61024 ARPP21-213ENST00000428373 3150 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CKS1BP61024 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 CPPED1-202ENST00000381774 6273 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 ABCA2-223ENST00000614293 8146 ntTSL 5 BASIC10.5□□□□□ -0.73
CKS1BP61024 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
CKS1BP61024 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms