Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA1P49639 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
HOXA1P49639 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
HOXA1P49639 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 HTR5BP-201ENST00000430851 1154 ntBASIC12.41□□□□□ -0.42
HOXA1P49639 MKNK2P1-201ENST00000437526 628 ntBASIC12.41□□□□□ -0.42
HOXA1P49639 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA1P49639 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA1P49639 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.41□□□□□ -0.42
HOXA1P49639 NMU-202ENST00000505262 693 ntTSL 3 BASIC12.41□□□□□ -0.42
HOXA1P49639 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC12.41□□□□□ -0.42
HOXA1P49639 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 SLED1-202ENST00000512051 380 ntBASIC12.41□□□□□ -0.42
HOXA1P49639 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC12.41□□□□□ -0.42
HOXA1P49639 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 AC084121.4-201ENST00000641598 221 ntBASIC12.41□□□□□ -0.42
HOXA1P49639 AF228730.8-201ENST00000642140 221 ntBASIC12.41□□□□□ -0.42
HOXA1P49639 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA1P49639 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
HOXA1P49639 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 AC027020.2-201ENST00000602585 2389 ntBASIC12.41□□□□□ -0.42
HOXA1P49639 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
HOXA1P49639 AC092117.1-201ENST00000621230 3250 ntBASIC12.4□□□□□ -0.42
HOXA1P49639 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 AC102953.2-201ENST00000609755 3026 ntBASIC12.4□□□□□ -0.42
HOXA1P49639 TEX30-205ENST00000376029 959 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXA1P49639 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 TARDBPP1-201ENST00000442013 1203 ntBASIC12.4□□□□□ -0.42
HOXA1P49639 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXA1P49639 CEND1P1-201ENST00000451006 455 ntBASIC12.4□□□□□ -0.42
HOXA1P49639 ALG1L5P-201ENST00000482043 771 ntBASIC12.4□□□□□ -0.42
HOXA1P49639 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXA1P49639 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA1P49639 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC12.4□□□□□ -0.42
HOXA1P49639 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXA1P49639 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 MTDHP5-201ENST00000598980 586 ntBASIC12.4□□□□□ -0.42
HOXA1P49639 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA1P49639 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA1P49639 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms