Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 KRT8P28-201ENST00000433288 1390 ntBASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 WASH3P-207ENST00000560956 1394 ntBASIC19.44■□□□□ 0.7
CSB-PGBD3P0DP91 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 IL9RP3-201ENST00000442856 1674 ntBASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 AC138466.4-201ENST00000623965 852 ntBASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 AL365203.3-201ENST00000609742 2057 ntBASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CSB-PGBD3P0DP91 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 HLA-DMA-203ENST00000395305 777 ntBASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AC092638.2-201ENST00000441105 947 ntBASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 LINC00431-202ENST00000636375 159 ntBASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 AC009093.10-201ENST00000641956 1442 ntBASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CSB-PGBD3P0DP91 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CSB-PGBD3P0DP91 RN7SL277P-201ENST00000481521 288 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms