Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RAPGEF3O95398 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.04
RAPGEF3O95398 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
RAPGEF3O95398 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC21.58■■□□□ 1.04
RAPGEF3O95398 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RAPGEF3O95398 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.04
RAPGEF3O95398 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
RAPGEF3O95398 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.04
RAPGEF3O95398 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RAPGEF3O95398 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RAPGEF3O95398 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RAPGEF3O95398 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC21.57■■□□□ 1.04
RAPGEF3O95398 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 KRT8P18-201ENST00000413425 1445 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC21.57■■□□□ 1.04
RAPGEF3O95398 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 AP000244.1-201ENST00000424582 201 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 AC136604.1-202ENST00000425471 771 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC21.57■■□□□ 1.04
RAPGEF3O95398 MAGEA7P-201ENST00000436482 942 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 IGKV1OR-2-201ENST00000457995 350 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC21.57■■□□□ 1.04
RAPGEF3O95398 AC120498.7-201ENST00000562876 330 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 NEK4P3-201ENST00000604859 544 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 AL136982.5-201ENST00000605222 294 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 AL591424.3-201ENST00000614278 872 ntBASIC21.57■■□□□ 1.04
RAPGEF3O95398 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAPGEF3O95398 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 PDXDC2P-206ENST00000534700 1315 ntBASIC21.56■■□□□ 1.04
RAPGEF3O95398 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 LINC00265-2P-201ENST00000413372 782 ntBASIC21.56■■□□□ 1.04
RAPGEF3O95398 FAM21EP-201ENST00000417804 985 ntBASIC21.56■■□□□ 1.04
RAPGEF3O95398 AHCYP3-201ENST00000420053 1279 ntBASIC21.56■■□□□ 1.04
RAPGEF3O95398 RN7SL846P-201ENST00000467429 292 ntBASIC21.56■■□□□ 1.04
RAPGEF3O95398 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 SRP14-208ENST00000560773 468 ntTSL 3 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 RN7SL556P-201ENST00000582856 298 ntBASIC21.56■■□□□ 1.04
RAPGEF3O95398 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
RAPGEF3O95398 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAPGEF3O95398 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 CYP2T1P-202ENST00000641596 2535 ntBASIC21.55■■□□□ 1.04
RAPGEF3O95398 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 AC006987.1-201ENST00000413610 527 ntBASIC21.55■■□□□ 1.04
RAPGEF3O95398 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 MIR4265-201ENST00000582152 99 ntBASIC21.55■■□□□ 1.04
RAPGEF3O95398 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC21.55■■□□□ 1.04
RAPGEF3O95398 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAPGEF3O95398 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms