Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.69■□□□□ 0.58
NPHP1O15259 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 KLF2P1-201ENST00000447438 1042 ntBASIC18.69■□□□□ 0.58
NPHP1O15259 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
NPHP1O15259 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC18.69■□□□□ 0.58
NPHP1O15259 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.69■□□□□ 0.58
NPHP1O15259 MIR4754-201ENST00000582477 89 ntBASIC18.69■□□□□ 0.58
NPHP1O15259 AC018635.2-201ENST00000608625 364 ntBASIC18.69■□□□□ 0.58
NPHP1O15259 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 AC011491.1-203ENST00000637688 543 ntBASIC18.69■□□□□ 0.58
NPHP1O15259 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 CYP2T1P-202ENST00000641596 2535 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 AC136759.1-202ENST00000530858 2194 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 AL513523.2-202ENST00000427283 2040 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 AC239868.1-201ENST00000369385 493 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 AL627231.1-201ENST00000394467 1125 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.68■□□□□ 0.58
NPHP1O15259 VDAC1P1-201ENST00000439229 848 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 AC079112.1-201ENST00000454972 939 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 MIR6720-201ENST00000611664 98 ntBASIC18.68■□□□□ 0.58
NPHP1O15259 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.68■□□□□ 0.58
NPHP1O15259 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.68■□□□□ 0.58
NPHP1O15259 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.68■□□□□ 0.58
NPHP1O15259 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NPHP1O15259 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.67■□□□□ 0.58
NPHP1O15259 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
NPHP1O15259 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.67■□□□□ 0.58
NPHP1O15259 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPHP1O15259 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms