Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 AC104794.3-201ENST00000566840 1248 ntBASIC12.7□□□□□ -0.38
SDCBPO00560 AC036164.1-201ENST00000570544 333 ntBASIC12.7□□□□□ -0.38
SDCBPO00560 AC004840.1-201ENST00000636359 365 ntBASIC12.7□□□□□ -0.38
SDCBPO00560 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
SDCBPO00560 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
SDCBPO00560 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
SDCBPO00560 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 RASL12-203ENST00000434605 982 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 AL589987.1-201ENST00000453380 819 ntBASIC12.69□□□□□ -0.38
SDCBPO00560 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.69□□□□□ -0.38
SDCBPO00560 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.69□□□□□ -0.38
SDCBPO00560 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.69□□□□□ -0.38
SDCBPO00560 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.69□□□□□ -0.38
SDCBPO00560 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 CICP8-201ENST00000455800 2813 ntBASIC12.69□□□□□ -0.38
SDCBPO00560 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.69□□□□□ -0.38
SDCBPO00560 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC12.69□□□□□ -0.38
SDCBPO00560 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SDCBPO00560 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC12.68□□□□□ -0.38
SDCBPO00560 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms