Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 AC011840.2-201ENST00000563063 1520 ntBASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 RN7SKP175-201ENST00000408472 289 ntBASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 PPY2P-201ENST00000582808 702 ntBASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 OR2I1P-209ENST00000641730 5365 ntBASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 AC020910.5-201ENST00000623668 1865 ntBASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 PCDHA3-202ENST00000532566 4594 ntBASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.78□□□□□ -0.04
TRIM39Q9HCM9 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM39Q9HCM9 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 AL136309.1-201ENST00000403917 691 ntBASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 AL355994.2-201ENST00000447882 704 ntBASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 AP006547.1-201ENST00000563435 692 ntBASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 RN7SL560P-201ENST00000577943 264 ntBASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 AL033527.4-201ENST00000641026 673 ntBASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.77□□□□□ -0.05
TRIM39Q9HCM9 KRT8P4-201ENST00000509735 1454 ntBASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 LINC01101-201ENST00000622953 1884 ntBASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM39Q9HCM9 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms