Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 CHMP4BP1-201ENST00000556017 588 ntBASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 AC100757.4-201ENST00000626934 759 ntBASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 KHSRPP1-201ENST00000427983 1768 ntBASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC60Q8IWA6 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AL008707.1-201ENST00000422498 534 ntBASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AC078875.1-201ENST00000431907 724 ntBASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 RBM8B-201ENST00000555532 525 ntBASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC60Q8IWA6 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 AC015688.4-201ENST00000580780 1647 ntBASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC60Q8IWA6 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms