Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 KRT18P28-201ENST00000453838 1332 ntBASIC11.48□□□□□ -0.57
HIST1H1AQ02539 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HIST1H1AQ02539 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 STRCP1-201ENST00000509801 5328 ntBASIC11.47□□□□□ -0.57
HIST1H1AQ02539 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 AC113367.3-201ENST00000508316 1912 ntBASIC11.47□□□□□ -0.57
HIST1H1AQ02539 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 AC092135.3-201ENST00000624151 1846 ntBASIC11.47□□□□□ -0.57
HIST1H1AQ02539 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 URGCP-206ENST00000446958 365 ntTSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 STOM-203ENST00000538954 1257 ntTSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SAMD11P1-201ENST00000571429 661 ntBASIC11.47□□□□□ -0.57
HIST1H1AQ02539 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 INO80C-210ENST00000590757 595 ntTSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 AC073869.1-201ENST00000415574 2762 ntBASIC11.47□□□□□ -0.57
HIST1H1AQ02539 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HIST1H1AQ02539 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 CES1P1-201ENST00000421606 1704 ntBASIC11.46□□□□□ -0.57
HIST1H1AQ02539 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HIST1H1AQ02539 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms