Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 FAM86MP-201ENST00000340703 885 ntBASIC13.76□□□□□ -0.21
RNF4P78317 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.76□□□□□ -0.21
RNF4P78317 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
RNF4P78317 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.76□□□□□ -0.21
RNF4P78317 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.76□□□□□ -0.21
RNF4P78317 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.76□□□□□ -0.21
RNF4P78317 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.76□□□□□ -0.21
RNF4P78317 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.76□□□□□ -0.21
RNF4P78317 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
RNF4P78317 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.76□□□□□ -0.21
RNF4P78317 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.76□□□□□ -0.21
RNF4P78317 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.75□□□□□ -0.21
RNF4P78317 AL136172.1-201ENST00000598590 1394 ntBASIC13.75□□□□□ -0.21
RNF4P78317 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.75□□□□□ -0.21
RNF4P78317 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
RNF4P78317 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 MRPL37P1-201ENST00000592451 1337 ntBASIC13.75□□□□□ -0.21
RNF4P78317 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
RNF4P78317 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.75□□□□□ -0.21
RNF4P78317 HSPB1P2-201ENST00000448722 546 ntBASIC13.75□□□□□ -0.21
RNF4P78317 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.75□□□□□ -0.21
RNF4P78317 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
RNF4P78317 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.75□□□□□ -0.21
RNF4P78317 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.75□□□□□ -0.21
RNF4P78317 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.75□□□□□ -0.21
RNF4P78317 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 AC008825.2-201ENST00000603374 718 ntBASIC13.75□□□□□ -0.21
RNF4P78317 MIR6799-201ENST00000620297 69 ntBASIC13.75□□□□□ -0.21
RNF4P78317 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.75□□□□□ -0.21
RNF4P78317 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.75□□□□□ -0.21
RNF4P78317 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.75□□□□□ -0.21
RNF4P78317 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
RNF4P78317 AC092135.3-201ENST00000624151 1846 ntBASIC13.75□□□□□ -0.21
RNF4P78317 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.75□□□□□ -0.21
RNF4P78317 SHC1P1-201ENST00000425230 1745 ntBASIC13.75□□□□□ -0.21
RNF4P78317 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.75□□□□□ -0.21
RNF4P78317 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
RNF4P78317 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RNF4P78317 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms