Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.35□□□□□ -0.27
VBP1P61758 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
VBP1P61758 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.35□□□□□ -0.27
VBP1P61758 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.35□□□□□ -0.27
VBP1P61758 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.35□□□□□ -0.27
VBP1P61758 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.35□□□□□ -0.27
VBP1P61758 HNRNPDP1-201ENST00000439535 754 ntBASIC13.35□□□□□ -0.27
VBP1P61758 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.35□□□□□ -0.27
VBP1P61758 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
VBP1P61758 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.35□□□□□ -0.27
VBP1P61758 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC13.35□□□□□ -0.27
VBP1P61758 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.35□□□□□ -0.27
VBP1P61758 AC027307.2-201ENST00000591252 911 ntBASIC13.35□□□□□ -0.27
VBP1P61758 IFNL4P1-201ENST00000607083 540 ntBASIC13.35□□□□□ -0.27
VBP1P61758 AC074044.1-201ENST00000609673 707 ntBASIC13.35□□□□□ -0.27
VBP1P61758 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.35□□□□□ -0.27
VBP1P61758 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.35□□□□□ -0.27
VBP1P61758 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.35□□□□□ -0.27
VBP1P61758 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
VBP1P61758 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
VBP1P61758 AL360270.3-201ENST00000609118 1348 ntBASIC13.35□□□□□ -0.27
VBP1P61758 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 CLK3P2-201ENST00000427566 1453 ntBASIC13.35□□□□□ -0.27
VBP1P61758 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
VBP1P61758 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VBP1P61758 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC13.35□□□□□ -0.27
VBP1P61758 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.34□□□□□ -0.27
VBP1P61758 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
VBP1P61758 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
VBP1P61758 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.34□□□□□ -0.27
VBP1P61758 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
VBP1P61758 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
VBP1P61758 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.34□□□□□ -0.27
VBP1P61758 TMPOP1-202ENST00000424642 1267 ntBASIC13.34□□□□□ -0.27
VBP1P61758 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.34□□□□□ -0.27
VBP1P61758 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.34□□□□□ -0.27
VBP1P61758 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.34□□□□□ -0.27
VBP1P61758 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC13.34□□□□□ -0.27
VBP1P61758 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 AP000550.4-202ENST00000639755 178 ntBASIC13.34□□□□□ -0.27
VBP1P61758 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 AP000437.1-201ENST00000624057 2085 ntBASIC13.34□□□□□ -0.27
VBP1P61758 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
VBP1P61758 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 NME1-209ENST00000511355 1645 ntTSL 5 BASIC13.34□□□□□ -0.27
VBP1P61758 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
VBP1P61758 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.34□□□□□ -0.27
VBP1P61758 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VBP1P61758 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC13.34□□□□□ -0.27
VBP1P61758 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC13.33□□□□□ -0.27
VBP1P61758 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.27
VBP1P61758 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VBP1P61758 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
VBP1P61758 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms