Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.43□□□□□ -0.42
HOXA1P49639 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 KLK8-202ENST00000320838 456 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 GHSR-202ENST00000427970 912 ntBASIC12.43□□□□□ -0.42
HOXA1P49639 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 MTND6P24-201ENST00000440466 518 ntBASIC12.43□□□□□ -0.42
HOXA1P49639 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC12.43□□□□□ -0.42
HOXA1P49639 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXA1P49639 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.43□□□□□ -0.42
HOXA1P49639 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.43□□□□□ -0.42
HOXA1P49639 AC018529.1-201ENST00000613063 361 ntBASIC12.43□□□□□ -0.42
HOXA1P49639 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
HOXA1P49639 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
HOXA1P49639 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 SLC1A2-208ENST00000606205 1890 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
HOXA1P49639 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 CD82-202ENST00000342935 967 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.42□□□□□ -0.42
HOXA1P49639 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC12.42□□□□□ -0.42
HOXA1P49639 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
HOXA1P49639 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 VENTXP1-201ENST00000569334 2716 ntBASIC12.42□□□□□ -0.42
HOXA1P49639 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
HOXA1P49639 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.42□□□□□ -0.42
HOXA1P49639 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA1P49639 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA1P49639 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
HOXA1P49639 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA1P49639 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA1P49639 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA1P49639 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms