Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CISHQ9NSE2 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CISHQ9NSE2 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CISHQ9NSE2 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CISHQ9NSE2 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.82■□□□□ 0.12
CISHQ9NSE2 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CISHQ9NSE2 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CISHQ9NSE2 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CISHQ9NSE2 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 AC139712.1-201ENST00000378256 1875 ntBASIC15.81■□□□□ 0.12
CISHQ9NSE2 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 MIR4741-201ENST00000579822 90 ntBASIC15.81■□□□□ 0.12
CISHQ9NSE2 AC006504.5-208ENST00000588784 2401 ntBASIC15.81■□□□□ 0.12
CISHQ9NSE2 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 AL136301.1-201ENST00000615830 422 ntBASIC15.81■□□□□ 0.12
CISHQ9NSE2 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.81■□□□□ 0.12
CISHQ9NSE2 AC007191.1-201ENST00000623179 2995 ntBASIC15.81■□□□□ 0.12
CISHQ9NSE2 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CISHQ9NSE2 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 AC068418.2-201ENST00000577309 3703 ntBASIC15.8■□□□□ 0.12
CISHQ9NSE2 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 AL590440.2-201ENST00000641973 1595 ntBASIC15.8■□□□□ 0.12
CISHQ9NSE2 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 MYADML-201ENST00000474610 2147 ntBASIC15.8■□□□□ 0.12
CISHQ9NSE2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.8■□□□□ 0.12
CISHQ9NSE2 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CISHQ9NSE2 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms