Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.32□□□□□ -0.28
LRRC28Q86X40 KRT8P24-201ENST00000560290 1559 ntBASIC13.32□□□□□ -0.28
LRRC28Q86X40 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRRC28Q86X40 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRRC28Q86X40 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRRC28Q86X40 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRRC28Q86X40 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRRC28Q86X40 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRRC28Q86X40 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AL353779.1-201ENST00000434793 351 ntBASIC13.31□□□□□ -0.28
LRRC28Q86X40 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 DOC2GP-202ENST00000514950 1163 ntBASIC13.31□□□□□ -0.28
LRRC28Q86X40 TIMM17BP1-201ENST00000545713 516 ntBASIC13.31□□□□□ -0.28
LRRC28Q86X40 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AC104794.3-201ENST00000566840 1248 ntBASIC13.31□□□□□ -0.28
LRRC28Q86X40 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRRC28Q86X40 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.31□□□□□ -0.28
LRRC28Q86X40 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRRC28Q86X40 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LRRC28Q86X40 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms