Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 AL354989.2-201ENST00000435838 1540 ntBASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 ST20-AS1-201ENST00000560255 4223 ntBASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 CSF2RBP1-201ENST00000447905 391 ntBASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.79□□□□□ -0.2
NUP54Q7Z3B4 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AC018442.1-201ENST00000421439 2061 ntBASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 HLA-V-201ENST00000429037 534 ntBASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 205.5 ms