Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SYNE3Q6ZMZ3 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 ST20-AS1-201ENST00000560255 4223 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 FKBP4P6-201ENST00000457486 1332 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 FAM197Y7-201ENST00000432892 766 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 KRT17P8-201ENST00000540749 863 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 ECM1P1-201ENST00000604092 1279 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 AC244669.2-201ENST00000612320 853 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 AC003102.2-201ENST00000589195 1469 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 MTHFR-210ENST00000641407 2387 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 AC026748.1-201ENST00000624349 3251 ntBASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SYNE3Q6ZMZ3 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 CD8B2-202ENST00000417670 633 ntBASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 RAB43P1-201ENST00000561790 589 ntBASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 SNX18-202ENST00000343017 3140 ntBASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.53■□□□□ 0.4
SYNE3Q6ZMZ3 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AC005912.2-201ENST00000619492 2400 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AL138725.1-201ENST00000407347 1314 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SYNE3Q6ZMZ3 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms