Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC16.75■□□□□ 0.27
TPM4P67936 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TPM4P67936 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.75■□□□□ 0.27
TPM4P67936 TCAM1P-207ENST00000485295 1537 ntBASIC16.75■□□□□ 0.27
TPM4P67936 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.75■□□□□ 0.27
TPM4P67936 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
TPM4P67936 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TPM4P67936 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 KRT8P24-201ENST00000560290 1559 ntBASIC16.74■□□□□ 0.27
TPM4P67936 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 AL645937.2-201ENST00000396808 931 ntBASIC16.74■□□□□ 0.27
TPM4P67936 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 HLA-V-204ENST00000476601 1289 ntBASIC16.74■□□□□ 0.27
TPM4P67936 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 AC051619.7-201ENST00000568314 623 ntBASIC16.74■□□□□ 0.27
TPM4P67936 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.74■□□□□ 0.27
TPM4P67936 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TPM4P67936 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM4P67936 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM4P67936 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TPM4P67936 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 AC090505.1-201ENST00000430515 1834 ntBASIC16.73■□□□□ 0.27
TPM4P67936 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM4P67936 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM4P67936 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.73■□□□□ 0.27
TPM4P67936 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM4P67936 AL512361.1-201ENST00000554200 418 ntBASIC16.73■□□□□ 0.27
TPM4P67936 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TPM4P67936 MIR4469-201ENST00000583919 79 ntBASIC16.73■□□□□ 0.27
TPM4P67936 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TPM4P67936 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TPM4P67936 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 TP73-201ENST00000346387 4854 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms