Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
PTPN4P29074 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PTPN4P29074 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
PTPN4P29074 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.02■□□□□ -0
PTPN4P29074 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC15.02■□□□□ -0
PTPN4P29074 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.02■□□□□ -0
PTPN4P29074 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.02■□□□□ -0
PTPN4P29074 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.02■□□□□ -0
PTPN4P29074 RN7SL837P-201ENST00000463010 287 ntBASIC15.02■□□□□ -0
PTPN4P29074 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.02■□□□□ -0
PTPN4P29074 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.02■□□□□ -0
PTPN4P29074 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
PTPN4P29074 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.02■□□□□ -0
PTPN4P29074 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.02■□□□□ -0
PTPN4P29074 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.02■□□□□ -0
PTPN4P29074 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTPN4P29074 AC106886.1-201ENST00000568660 600 ntBASIC15.02■□□□□ -0
PTPN4P29074 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.02■□□□□ -0
PTPN4P29074 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.02■□□□□ -0
PTPN4P29074 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.02■□□□□ -0
PTPN4P29074 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.02■□□□□ -0
PTPN4P29074 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.02■□□□□ -0
PTPN4P29074 AC017083.2-201ENST00000608069 979 ntBASIC15.02■□□□□ -0
PTPN4P29074 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
PTPN4P29074 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.02□□□□□ -0.01
PTPN4P29074 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.02□□□□□ -0.01
PTPN4P29074 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.02□□□□□ -0.01
PTPN4P29074 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 AC130686.1-201ENST00000622936 2466 ntBASIC15.02□□□□□ -0.01
PTPN4P29074 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
PTPN4P29074 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTPN4P29074 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
PTPN4P29074 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.01□□□□□ -0.01
PTPN4P29074 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.01□□□□□ -0.01
PTPN4P29074 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
PTPN4P29074 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.01□□□□□ -0.01
PTPN4P29074 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PTPN4P29074 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTPN4P29074 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.01□□□□□ -0.01
PTPN4P29074 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PTPN4P29074 TTTY23B-201ENST00000442790 549 ntBASIC15.01□□□□□ -0.01
PTPN4P29074 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN4P29074 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN4P29074 TPT1P11-201ENST00000458482 498 ntBASIC15.01□□□□□ -0.01
PTPN4P29074 AC104596.2-201ENST00000512793 793 ntBASIC15.01□□□□□ -0.01
PTPN4P29074 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.01□□□□□ -0.01
PTPN4P29074 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.01□□□□□ -0.01
PTPN4P29074 RARRES2P5-201ENST00000564013 466 ntBASIC15.01□□□□□ -0.01
PTPN4P29074 AC097359.3-201ENST00000603982 1210 ntBASIC15.01□□□□□ -0.01
PTPN4P29074 TMEM261P1-201ENST00000604899 340 ntBASIC15.01□□□□□ -0.01
PTPN4P29074 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.01□□□□□ -0.01
PTPN4P29074 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms