Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC18.06■□□□□ 0.48
COL5A3P25940 AL136982.5-201ENST00000605222 294 ntBASIC18.06■□□□□ 0.48
COL5A3P25940 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
COL5A3P25940 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL5A3P25940 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.06■□□□□ 0.48
COL5A3P25940 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL5A3P25940 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC18.06■□□□□ 0.48
COL5A3P25940 KRT18P4-201ENST00000422599 1288 ntBASIC18.06■□□□□ 0.48
COL5A3P25940 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC18.06■□□□□ 0.48
COL5A3P25940 AL451000.1-201ENST00000451300 1186 ntBASIC18.06■□□□□ 0.48
COL5A3P25940 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC18.06■□□□□ 0.48
COL5A3P25940 AC063952.3-201ENST00000467756 308 ntBASIC18.06■□□□□ 0.48
COL5A3P25940 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 RN7SL147P-201ENST00000487345 298 ntBASIC18.06■□□□□ 0.48
COL5A3P25940 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC18.06■□□□□ 0.48
COL5A3P25940 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL5A3P25940 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
COL5A3P25940 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC18.06■□□□□ 0.48
COL5A3P25940 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC18.06■□□□□ 0.48
COL5A3P25940 GOLGA8UP-201ENST00000527159 1755 ntBASIC18.06■□□□□ 0.48
COL5A3P25940 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL5A3P25940 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A3P25940 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A3P25940 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A3P25940 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL5A3P25940 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A3P25940 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A3P25940 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC18.05■□□□□ 0.48
COL5A3P25940 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
COL5A3P25940 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A3P25940 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL5A3P25940 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC18.05■□□□□ 0.48
COL5A3P25940 PSAT1P2-201ENST00000426107 972 ntBASIC18.05■□□□□ 0.48
COL5A3P25940 AC008026.2-201ENST00000495438 348 ntBASIC18.05■□□□□ 0.48
COL5A3P25940 PRSS3P1-201ENST00000503996 742 ntBASIC18.05■□□□□ 0.48
COL5A3P25940 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A3P25940 MIR6074-201ENST00000612054 107 ntBASIC18.05■□□□□ 0.48
COL5A3P25940 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A3P25940 AP000769.1-203ENST00000637245 208 ntBASIC18.05■□□□□ 0.48
COL5A3P25940 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A3P25940 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A3P25940 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.05■□□□□ 0.48
COL5A3P25940 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC18.05■□□□□ 0.48
COL5A3P25940 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL5A3P25940 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 AC013268.4-201ENST00000637413 2228 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 AC215219.1-201ENST00000400706 1817 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC18.04■□□□□ 0.48
COL5A3P25940 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 HNRNPA1P2-207ENST00000432375 960 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 IGHEP2-201ENST00000519308 1256 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 GOLGA2P7-209ENST00000560408 745 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 AP005212.2-201ENST00000584979 510 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC18.04■□□□□ 0.48
COL5A3P25940 AL160191.2-201ENST00000603975 601 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC18.04■□□□□ 0.48
COL5A3P25940 COQ4-204ENST00000608951 781 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 AL359091.4-201ENST00000610052 409 ntBASIC18.04■□□□□ 0.48
COL5A3P25940 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
COL5A3P25940 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL5A3P25940 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.04■□□□□ 0.48
COL5A3P25940 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
COL5A3P25940 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A3P25940 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A3P25940 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms